Package index • REddyProc

All functions
`BerkeleyJulianDateToPOSIXct()`	BerkeleyJulianDateToPOSIXct
`DEGebExample`	Eddy covariance data from Gebesee crop site, Germany
`Example_DETha98`	Eddy covariance data from Tharandt, Germany
`LightResponseCurveFitter-class`	Class `"LightResponseCurveFitter"`
`LightResponseCurveFitter()`	LightResponseCurveFitter
`LightResponseCurveFitter_computeCost()`	LightResponseCurveFitter computeCost
`LightResponseCurveFitter_computeLRCGradient()`	LightResponseCurveFitter computeLRCGradient
`LightResponseCurveFitter_fitLRC()`	LightResponseCurveFitter fitLRC
`LightResponseCurveFitter_getOptimizedParameterPositions()`	LightResponseCurveFitter getOptimizedParameterPositions
`LightResponseCurveFitter_getParameterInitials()`	LightResponseCurveFitter getParameterInitials
`LightResponseCurveFitter_getParameterNames()`	LightResponseCurveFitter getParameterNames
`LightResponseCurveFitter_getPriorLocation()`	LightResponseCurveFitter getPriorLocation
`LightResponseCurveFitter_getPriorScale()`	LightResponseCurveFitter getPriorScale
`LightResponseCurveFitter_isParameterInBounds()`	LightResponseCurveFitter isParameterInBounds
`LightResponseCurveFitter_optimLRC()`	LightResponseCurveFitter optimLRC
`LightResponseCurveFitter_optimLRCBounds()`	LightResponseCurveFitter optimLRCBounds
`LightResponseCurveFitter_optimLRCOnAdjustedPrior()`	LightResponseCurveFitter optimLRCOnAdjustedPrior
`LightResponseCurveFitter_predictGPP()`	LightResponseCurveFitter predictGPP
`LightResponseCurveFitter_predictLRC()`	LightResponseCurveFitter predictLRC
`LogisticSigmoidLRCFitter-class`	Class `"LogisticSigmoidLRCFitter"`
`LogisticSigmoidLRCFitter()`	LogisticSigmoidLRCFitter
`LogisticSigmoidLRCFitter_predictGPP()`	LogisticSigmoidLRCFitter predictGPP
`NonrectangularLRCFitter-class`	Class `"NonrectangularLRCFitter"`
`NonrectangularLRCFitter()`	NonrectangularLRCFitter
`NonrectangularLRCFitter_computeGPPGradient()`	Gradient of [NonrectangularLRCFitter_predictGPP()]
`NonrectangularLRCFitter_computeLRCGradient()`	Gradient of [NonrectangularLRCFitter_predictLRC()]
`NonrectangularLRCFitter_getOptimizedParameterPositions()`	Get the positions of the parameters to optimize for given Fixed
`NonrectangularLRCFitter_getParameterNames()`	NonrectangularLRCFitter getParameterNames
`NonrectangularLRCFitter_predictGPP()`	NonrectangularLRCFitter predictGPP
`NonrectangularLRCFitter_predictLRC()`	Nonrectangular Hyperbolic Light Response function: (Gilmanov et al., 2003)
`POSIXctToBerkeleyJulianDate()`	POSIXctToBerkeleyJulianDate
`REddyProc-package` `REddyProc`	Post Processing of (Half-)Hourly Eddy-Covariance Measurements
`REddyProc_defaultunits()`	Get the default units for given variables
`RHLightResponseCostC()`	RHLightResponseCostC
`RectangularLRCFitter-class`	Class `"RectangularLRCFitter"`
`RectangularLRCFitter()`	RectangularLRCFitter
`RectangularLRCFitterCVersion-class`	Class `"RectangularLRCFitterCVersion"`
`RectangularLRCFitterCVersion()`	RectangularLRCFitterCVersion
`RectangularLRCFitterCVersion_computeCost()`	Computing residual sum of squares for predictions vs. data of NEE
`RectangularLRCFitter_computeGPPGradient()`	RectangularLRCFitter_computeGPPGradient
`RectangularLRCFitter_predictGPP()`	RectangularLRCFitter predictGPP
`estimate_vpd_from_dew()`	Estimate VPD from assuming dewpoint at daily minimum temperature
`extract_FN15()`	extract processing results with columns corresponding to Fluxnet15 release
`fCalcAVPfromVMFandPress()`	fCalcAVPfromVMFandPress
`fCalcETfromLE()`	fCalcETfromLE
`fCalcExtRadiation()`	fCalcExtRadiation
`fCalcPotRadiation()`	fCalcPotRadiation
`fCalcRHfromAVPandTair()`	fCalcRHfromAVPandTair
`fCalcSVPfromTair()`	fCalcSVPfromTair
`fCalcVPDfromRHandTair()`	fCalcVPDfromRHandTair
`fCheckHHTimeSeries()`	fCheckHHTimeSeries
`fConvertCtoK()`	fConvertCtoK
`fConvertGlobalToVisible()`	fConvertGlobalToVisible
`fConvertKtoC()`	fConvertKtoC
`fConvertTimeToPosix()`	fConvertTimeToPosix
`fConvertVisibleWm2toPhotons()`	fConvertVisibleWm2toPhotons
`fKeepColumnAttributes()`	fKeepColumnAttributes
`fLloydTaylor()`	Temperature dependence of soil respiration
`fLoadAmeriflux22()`	Read basic variables from Ameriflux standard (as of 2022) files
`fLoadEuroFlux16()`	fLoadEuroFlux16
`fLoadFluxnet15()`	Read a file in the format of Fluxnet 2015 release
`fLoadTXTIntoDataframe()`	Load text file with one header and one unit row into data frame
`fSplitDateTime()`	fSplitDateTime
`fWriteDataframeToFile()`	fWriteDataframeToFile
`fWriteFrench23()`	fWriteFrench23
`filterLongRuns()`	filterLongRuns
`filterLongRunsInVector()`	filterLongRunsInVector
`filter_entire_days()`	filter entire days
`filter_years_eop()`	filter years eop
`getAmerifluxToBGC05VariableNameMapping()`	getAmerifluxToBGC05VariableNameMapping
`getBGC05ToAmerifluxVariableNameMapping()`	getBGC05ToAmerifluxVariableNameMapping
`getExamplePath()`	getExamplePath
`getFilledExampleDETha98Data()`	getFilledExampleDETha98Data
`getREddyProcExampleDir()`	getREddyProcExampleDir
`getTZone()`	getTZone
`get_day_boundaries()`	get day boundaries
`get_timestep_hours()`	Get the timestep in fractional hours
`sID` `sDATA` `sINFO` `sLOCATION` `sTEMP` `sUSTAR`	globalDummyVars
`help_DateTimes()`	help DateTimes
`help_export()`	help export
`partGLControl()`	partGLControl
`partGLControlLasslopCompatible()`	partGLControlLasslopCompatible
`partGLExtractStandardData()`	partGLExtractStandardData
`partitionNEEGL()`	partitionNEEGL
`read_from_ameriflux22()`	Extract basic variables from Ameriflux standard (as of 2022) data.frames
`read_from_fluxnet15()`	extract REddyProc input columns from data.frame in Fluxnet15 format
`renameVariablesInDataframe()`	renameVariablesInDataframe
`sEddyProc-class`	Class `"sEddyProc"`
`sEddyProc()`	sEddyProc
`sEddyProc_initialize()`	sEddyProc initialize
`sEddyProc_sApplyUStarScen()`	sEddyProc sApplyUStarScen
`sEddyProc_sCalcPotRadiation()`	sEddyProc sCalcPotRadiation
`sEddyProc_sEstUstarThold()`	sEddyProc$sEstUstarThreshold - Estimating ustar threshold
`sEddyProc_sEstUstarThreshold()`	sEddyProc$sEstUstarThreshold - Estimating ustar threshold
`sEddyProc_sEstUstarThresholdDistribution()`	sEddyProc sEstUstarThresholdDistribution
`sEddyProc_sEstimateUstarScenarios()`	sEddyProc sEstimateUstarScenarios
`sEddyProc_sExportData()`	sEddyProc sExportData
`sEddyProc_sExportResults()`	sEddyProc sExportResults
`sEddyProc_sFillInit()`	sEddyProc$sFillInit - Initialize gap filling
`sEddyProc_sFillLUT()`	sEddyProc sFillLUT
`sEddyProc_sFillMDC()`	sEddyProc sFillMDC
`sEddyProc_sFillVPDFromDew()`	Estimate VPD from daily minimum temperature
`sEddyProc_sGLFluxPartition()`	sEddyProc sGLFluxPartition
`sEddyProc_sGLFluxPartitionUStarScens()`	sEddyProc sGLFluxPartitionUStarScens
`sEddyProc_sGetData()`	sEddyProc sGetData
`sEddyProc_sGetEstimatedUstarThresholdDistribution()`	sEddyProc sGetEstimatedUstarThresholdDistribution
`sEddyProc_sGetUstarScenarios()`	sEddyProc sGetUstarScenarios
`sEddyProc_sGetUstarSuffixes()`	sEddyProc sGetUstarSuffixes
`sEddyProc_sMDSGapFill()`	sEddyProc sMDSGapFill
`sEddyProc_sMDSGapFillAfterUStarDistr()`	sEddyProc sMDSGapFillAfterUStarDistr
`sEddyProc_sMDSGapFillAfterUstar()`	sEddyProc sMDSGapFillAfterUstar
`sEddyProc_sMDSGapFillUStarScens()`	sEddyProc sMDSGapFillUStarScens
`sEddyProc_sMRFluxPartition()`	sEddyProc sMRFluxPartition
`sEddyProc_sMRFluxPartitionUStarScens()`	sEddyProc sMRFluxPartitionUStarScens
`sEddyProc_sPlotDailySums()`	sEddyProc$sPlotDailySums - Image with daily sums of each year
`sEddyProc_sPlotDailySumsY()`	sEddyProc sPlotDailySumsY
`sEddyProc_sPlotDiurnalCycle()`	sEddyProc sPlotDiurnalCycle
`sEddyProc_sPlotDiurnalCycleM()`	sEddyProc sPlotDiurnalCycleM
`sEddyProc_sPlotFingerprint()`	sEddyProc sPlotFingerprint
`sEddyProc_sPlotFingerprintY()`	sEddyProc sPlotFingerprintY
`sEddyProc_sPlotHHFluxes()`	sEddyProc sPlotHHFluxes
`sEddyProc_sPlotHHFluxesY()`	sEddyProc sPlotHHFluxesY
`sEddyProc_sPlotNEEVersusUStarForSeason()`	sEddyProc sPlotNEEVersusUStarForSeason
`sEddyProc_sSetLocationInfo()`	sEddyProc sSetLocationInfo
`sEddyProc_sSetUStarSeasons()`	sEddyProc sSetUStarSeasons
`sEddyProc_sSetUstarScenarios()`	sEddyProc sSetUstarScenarios
`sEddyProc_sTKFluxPartition()`	sEddyProc sTKFluxPartition
`sEddyProc_sTKFluxPartitionUStarScens()`	sEddyProc sTKFluxPartitionUStarScens
`sEddyProc_update_ustarthreshold_columns()`	Add columns reporting the uStar threshold for each scenario to sDATA
`sEddyProc_useAnnualUStarThresholds()`	sEddyProc useAnnualUStarThresholds
`sEddyProc_useSeaonsalUStarThresholds()`	sEddyProc useSeaonsalUStarThresholds
`usControlUstarEst()`	usControlUstarEst
`usControlUstarSubsetting()`	usControlUstarSubsetting
`usCreateSeasonFactorMonth()`	usCreateSeasonFactorMonth
`usCreateSeasonFactorMonthWithinYear()`	usCreateSeasonFactorMonthWithinYear
`usCreateSeasonFactorYday()`	usCreateSeasonFactorYday
`usCreateSeasonFactorYdayYear()`	usCreateSeasonFactorYdayYear
`usEstUstarThreshold()`	usEstUstarThreshold - Estimating ustar threshold
`usEstUstarThresholdSingleFw1Binned()`	usEstUstarThresholdSingleFw1Binned
`usEstUstarThresholdSingleFw2Binned()`	usEstUstarThresholdSingleFw2Binned
`usGetAnnualSeasonUStarMap()`	usGetAnnualSeasonUStarMap
`usGetSeasonalSeasonUStarMap()`	usGetSeasonalSeasonUStarMap
`usGetYearOfSeason()`	usGetYearOfSeason

Reference

All functions